Reformat DADA2 Genus

Reformat DADA2 Genus

reformat_dada2_gen(
  x,
  db = NULL,
  ranks = c("kingdom", "phylum", "class", "order", "family", "genus"),
  quiet = FALSE
)

Arguments

x

A DNAbin or DNAStringSet object with names in format accession|tax_id;Genus species

db

A database file generated by get_ncbi_taxonomy or get_ott_lineage. Required if get_lineage is TRUE

ranks

The taxonomic ranks to include in output. default is kingdom;phylum;class;order;family;genus

quiet

Whether progress should be printed to the console.